Input a sequence

GP outline Welcome(!) and thank you for your interest in this RNA secondary structure prediction server.
GenoPoemics (GP) is a program to visualize the secondary structure of long RNA.
You can predict the secondary structure of a long RNA by vsfold5 (without pseudoknot) with sliding windows and the result is visualized by GP.
You will receive a mail showing the URL of the result.

* mark is input required field.

E-Mail address *
(Output results will be notified.)
Sequence name *
No special characters!!!
Sequence *
coding sequence region *
(e.g.: 15..641)
non-coding
vswindow options
Window size
[200-300]
Kuhn length
[4-9]
GP options
VS, VD and VI are calculated on each motifs and displayed visually on spectra.
VS
50%(default)     60%     70%     80%     90%     100%
VS, Validity-Static, is calculated based on a single window generating multiple predicted structures (forms), and therefore VS represents the sum of the population of forms in which the motifs were found.
VD
0%(default)     10%     20%     30%     40%     50%
VD, Validity-Dynamic, represented how often motifs maintained their shapes, even under the different windows which contain the motifs.
VI
0%(default)
VI, validity-integrated, represents the comprehensive validity of motifs.
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